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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1212
total RNA-seq
1171
ChIP-seq
284
ATAC-seq
154
DNase-seq
89
single cell RNA-seq
87
RNA microarray
37
pCHi-C
28
snATAC-seq
21
Hi-C
20
WGBS
15
small RNA-seq
10
MeRIP-seq
10
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
3D chromatin structure
Date released
7
March, 2020
4
July, 2019
3
August, 2021
3
October, 2019
2
November, 2019
1
December, 2018
1
March, 2019
1
October, 2022
Available data
14
hic
13
bedpe bed3+
1
bed bed3+
1
bedpe
1
bigWig
1
fastq
1
hdf5
1
txt
Organism
21
Homo sapiens
Biosample type
13
tissue
primary cell
5
cell line
4
in vitro differentiated cells
Organ
6
musculature of body
6
pancreas
4
limb
heart
3
liver
1
blood vessel
1
epithelium
1
kidney
1
vasculature
Project
22
AMP
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
18
AMP-T2D consortium
3
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
primary cell
files.file_type!
tagAlign
organ_slims!
heart
BIOSAMPLE
ASSAY
22 results
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Clear Filters
Hi-C
MPRA
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
kidney
1
+ See 2 more…
cell line
HepG2
2
EndoC_BH1
1
MIN6
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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