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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
566
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
7
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
4
July, 2019
1
August, 2021
1
December, 2018
1
March, 2023
Available data
1
bedpe bed3+
1
fastq
1
hic
Organism
17
Homo sapiens
Biosample type
9
tissue
7
cell line
1
primary cell
Organ
11
pancreas
6
epithelium
4
limb
4
musculature of body
1
liver
Project
16
AMP
1
ITG
Genome assembly (visualization)
hg19
2
GRCh38
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
Audit category:
6
inconsistent ontology term
assay_title!
Capture-C
assembly!
hg19
BIOSAMPLE
ASSAY
17 results
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MeRIP-seq
Hi-C
tissue
islet of Langerhans
4
1
gastrocnemius medialis
4
cell line
EndoC_BH1
6
HepG2
1
primary cell
chondrocytes
1
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