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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
566
ChIP-seq
270
ATAC-seq
263
single cell RNA-seq
248
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
53
pCHi-C
26
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
0
small RNA-seq
Assay category
75
DNA methylation
7
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
16
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
6
February, 2021
1
August, 2021
1
December, 2018
1
March, 2023
Available data
41
zippedFastqFolder
18
bam
18
fastq
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
6
tsv
1
bedpe bed3+
1
hic
Organism
92
Homo sapiens
Biosample type
48
primary cell
36
tissue
8
cell line
Organ
62
pancreas
53
epithelium
8
heart
6
adipose tissue
6
connective tissue
6
liver
5
limb
5
musculature of body
2
blood vessel
2
spleen
2
vasculature
Project
47
HPAP
44
AMP
1
ITG
Genome assembly (visualization)
hg19
37
GRCh38
Lab
47
Klaus Kaestner, Upenn
33
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
ITG
Audit category:
6
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
assembly!
hg19
BIOSAMPLE
ASSAY
92 results
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WGBS
MeRIP-seq
Hi-C
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
chondrocytes
1
tissue
islet of Langerhans
4
1
gastrocnemius medialis
4
heart left ventricle
4
adipose tissue
3
liver
3
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cell line
EndoC_BH1
6
HepG2
1
1
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