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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
218
ChIP-seq
152
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
80
Transcription
9
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
39
April, 2018
37
July, 2018
10
November, 2020
3
August, 2018
3
October, 2022
2
November, 2019
1
August, 2021
1
June, 2018
1
March, 2019
1
March, 2020
1
October, 2019
Available data
81
bigWig
80
bam
80
tsv
75
fastq
7
bedpe bed3+
7
hic
3
cool
1
bed bed3+
1
bedpe
1
hdf5
Organism
99
Homo sapiens
Biosample type
77
primary cell
14
tissue
8
cell line
Organ
99
pancreas
96
heart
84
epithelium
kidney
11
blood vessel
11
vasculature
9
lung
7
musculature of body
6
brain
5
connective tissue
5
liver
4
limb
2
artery
2
vein
Project
96
AMP
3
HPAP
Genome assembly (visualization)
88
hg19
81
GRCh38
Lab
84
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
kidney
BIOSAMPLE
ASSAY
99 results
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single cell RNA-seq
MeRIP-seq
Hi-C
primary cell
pancreatic acinar cell
12
1
pancreatic alpha cell
12
1
pancreatic beta cell
12
1
pancreatic delta cell
11
pancreatic ductal cell
10
+ See 4 more…
tissue
islet of Langerhans
6
4
3
pancreas
1
cell line
EndoC_BH1
6
1
Panc1
1
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