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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
352
ChIP-seq
199
ATAC-seq
173
single cell RNA-seq
59
WGBS
38
DNase-seq
12
Hi-C
11
snATAC-seq
10
MeRIP-seq
4
RRBS
4
pCHi-C
3
small RNA-seq
2
Capture-C
2
FAIRE-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
12
3D chromatin structure
4
DNA methylation
Date released
4
July, 2019
3
March, 2020
3
October, 2022
2
November, 2019
2
October, 2019
1
August, 2021
1
March, 2019
Available data
10
bedpe bed3+
10
hic
4
bed bedMethyl
4
bigBed bedMethyl
3
cool
1
bed bed3+
1
bedpe
1
bigWig
1
hdf5
Organism
16
Homo sapiens
Biosample type
10
tissue
4
primary cell
2
cell line
Organ
14
epithelium
11
musculature of body
11
pancreas
6
liver
6
vasculature
5
blood vessel
5
brain
5
heart
5
kidney
4
limb
2
connective tissue
2
vein
1
eye
1
pericardium
Project
13
AMP
3
HPAP
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
11
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
2
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
16 results
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Clear Filters
Hi-C
RRBS
tissue
islet of Langerhans
3
1
heart left ventricle
1
1
pancreas
1
1
heart
1
heart right ventricle
1
primary cell
cardiac fibroblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
Panc1
1
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