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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
93
single cell RNA-seq
73
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
RRBS
3
pCHi-C
1
small RNA-seq
Assay category
73
Transcription
3
3D chromatin structure
3
DNA methylation
Date released
52
February, 2021
14
July, 2019
4
March, 2020
3
February, 2020
3
May, 2021
3
October, 2019
Available data
73
tsv
70
bam
70
bigWig
3
bed bedMethyl
3
bedpe bed3+
3
bigBed bedMethyl
3
hic
Organism
79
Homo sapiens
Biosample type
52
cell line
20
tissue
6
primary cell
1
in vitro differentiated cells
Organ
476
connective tissue
408
pancreas
398
adipose tissue
195
liver
145
epithelium
77
heart
67
vasculature
66
blood vessel
65
kidney
62
bone element
56
artery
22
brain
20
eye
17
musculature of body
14
embryo
11
limb
5
nerve
4
skeleton
2
pericardium
2
vein
1
spinal cord
Project
79
AMP
Genome assembly (visualization)
76
hg19
70
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
79 results
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total RNA-seq
Hi-C
RRBS
cell line
smooth muscle cell of the coronary artery
52
tissue
heart
4
1
heart left ventricle
3
1
1
right atrium auricular region
3
heart right ventricle
1
1
cardiac atrium
1
+ See 4 more…
primary cell
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
pericardium fibroblast
1
+ See 1 more…
in vitro differentiated cells
cardiac fibroblast
1
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