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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
168
ATAC-seq
127
total RNA-seq
59
single cell RNA-seq
41
WGBS
30
DNase-seq
29
snATAC-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
10
3D chromatin structure
9
DNA methylation
Date released
13
July, 2019
3
October, 2022
1
March, 2020
1
March, 2023
1
October, 2019
Available data
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bed bed3+
4
bedpe bed3+
4
bigWig
4
hdf5
3
cool
fastq
Organism
19
Homo sapiens
Biosample type
24
tissue
19
primary cell
4
in vitro differentiated cells
3
cell line
Organ
13
epithelium
5
vasculature
4
blood vessel
4
brain
3
kidney
3
pancreas
2
connective tissue
2
liver
2
vein
1
eye
1
heart
1
musculature of body
Project
15
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
15
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
4
audit script error
2
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
19 results
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Hi-C
RRBS
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac fibroblast
1
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