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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
352
ChIP-seq
302
ATAC-seq
127
total RNA-seq
122
single cell RNA-seq
87
RNA microarray
30
pCHi-C
21
RRBS
18
Hi-C
11
WGBS
8
snATAC-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
DNAme array
1
DNase-seq
0
STARR-seq
Assay category
18
3D chromatin structure
Date released
10
March, 2020
4
July, 2019
October, 2019
2
August, 2021
1
March, 2019
1
November, 2019
Available data
13
hic
12
bedpe bed3+
4
bed bed3+
bigWig
4
hdf5
1
bedpe
Organism
18
Homo sapiens
Biosample type
15
tissue
cell line
2
in vitro differentiated cells
1
primary cell
Organ
6
musculature of body
4
limb
4
pancreas
2
blood vessel
2
heart
2
vasculature
1
epithelium
1
kidney
1
liver
1
vein
Project
18
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
13
hg19
Lab
15
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
2
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bigWig
month_released!
October, 2019
BIOSAMPLE
ASSAY
18 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
1
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