Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1589
ChIP-seq
1241
total RNA-seq
339
ATAC-seq
217
single cell RNA-seq
87
RNA microarray
38
pCHi-C
28
WGBS
21
RRBS
19
Hi-C
18
small RNA-seq
8
DNase-seq
5
GRO-seq
4
FAIRE-seq
3
snDrop-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
snATAC-seq
0
STARR-seq
Assay category
19
3D chromatin structure
Date released
9
March, 2020
4
July, 2019
3
October, 2019
2
November, 2019
1
December, 2018
Available data
14
bedpe bed3+
14
hic
bed bed3+
5
bigWig
5
hdf5
1
fastq
Organism
19
Homo sapiens
Biosample type
13
tissue
4
in vitro differentiated cells
2
cell line
Organ
6
musculature of body
4
limb
3
blood vessel
3
epithelium
3
heart
3
pancreas
3
vasculature
2
liver
vein
Project
19
AMP
Genome assembly (visualization)
14
hg19
Lab
19
AMP-T2D consortium
8
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
files.file_type!
bed bed3+
organ_slims!
vein
BIOSAMPLE
ASSAY
19 results
search-icon
table-tab-icon
Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
Download