Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
24
WGBS
19
RRBS
small RNA-seq
9
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
24
DNA methylation
9
3D chromatin structure
Date released
20
July, 2019
9
August, 2017
3
November, 2018
1
December, 2018
Available data
17
bigWig
hic
14
bam
13
bed bedMethyl
13
bedpe bed3+
13
bigBed bedMethyl
8
fastq
4
bed bed3+
4
hdf5
Organism
33
Homo sapiens
Biosample type
27
tissue
4
primary cell
2
cell line
Organ
pancreas
49
epithelium
8
heart
7
connective tissue
7
liver
6
adipose tissue
5
limb
5
musculature of body
4
blood vessel
4
vasculature
3
brain
2
spleen
Project
33
AMP
Genome assembly (visualization)
13
GRCh38
4
hg19
Lab
33
AMP-T2D consortium
assay_title!
small RNA-seq
files.file_type!
hic
organ_slims!
pancreas
BIOSAMPLE
ASSAY
33 results
search-icon
table-tab-icon
Clear Filters
WGBS
Hi-C
tissue
gastrocnemius medialis
4
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 7 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
1
See all biosamples
Download