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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
129
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
47
DNA methylation
8
3D chromatin structure
Date released
41
May, 2022
6
February, 2021
3
October, 2022
2
July, 2019
1
March, 2020
1
November, 2019
1
October, 2019
Available data
41
zippedFastqFolder
6
fastq
6
hic
6
tsv
5
bedpe bed3+
3
cool
2
bed bed3+
2
bigWig
2
hdf5
Organism
55
Homo sapiens
Biosample type
54
primary cell
1
cell line
Organ
60
pancreas
55
epithelium
11
heart
9
liver
7
blood vessel
7
connective tissue
7
musculature of body
7
vasculature
6
adipose tissue
5
limb
3
brain
2
spleen
2
vein
1
kidney
Project
50
HPAP
5
AMP
Genome assembly (visualization)
8
hg19
Lab
50
Klaus Kaestner, Upenn
5
AMP-T2D consortium
Audit category:
4
audit script error
1
inconsistent ontology term
assay_title!
total RNA-seq
files.file_type!
csv
BIOSAMPLE
ASSAY
55 results
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WGBS
Hi-C
primary cell
pancreatic alpha cell
31
1
pancreatic beta cell
16
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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cell line
EndoC_BH1
1
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