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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
total RNA-seq
114
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
8
Hi-C
6
DNase-seq
6
MeRIP-seq
3
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
0
shRNA RNA-seq
Assay category
124
Transcription
8
3D chromatin structure
Date released
39
February, 2023
26
February, 2021
26
September, 2018
16
September, 2020
6
May, 2021
5
December, 2019
3
July, 2019
3
March, 2020
3
October, 2022
2
November, 2019
2
October, 2018
1
October, 2019
Available data
81
fastq
71
bigWig
71
tsv
69
bam
6
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
hdf5
Organism
132
Homo sapiens
Biosample type
94
primary cell
34
cell line
2
in vitro differentiated cells
2
tissue
Organ
475
connective tissue
406
pancreas
398
adipose tissue
193
liver
139
epithelium
75
heart
66
blood vessel
66
vasculature
62
bone element
kidney
56
artery
20
brain
19
eye
14
embryo
12
musculature of body
11
limb
5
nerve
4
skeleton
2
vein
1
pericardium
1
spinal cord
Project
74
AMP
56
HPAP
2
T1D
Genome assembly (visualization)
77
hg19
69
GRCh38
Lab
76
AMP-T2D consortium
56
Klaus Kaestner, Upenn
Audit category:
35
inconsistent ontology term
4
audit script error
organ_slims!
kidney
BIOSAMPLE
ASSAY
132 results
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total RNA-seq
Hi-C
primary cell
pancreatic alpha cell
52
1
pancreatic beta cell
21
1
hepatocyte
5
pancreatic acinar cell
4
1
pancreatic ductal cell
4
+ See 4 more…
cell line
EndoC_BH1
33
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
tissue
pigmented layer of retina
2
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