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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
187
Transcription
56
DNA accessibility
10
3D chromatin structure
Target of assay
3
control
Date released
54
May, 2022
48
July, 2018
43
April, 2018
40
September, 2020
39
February, 2021
8
January, 2021
7
July, 2019
3
August, 2018
3
June, 2018
3
October, 2022
1
March, 2020
1
March, 2023
1
November, 2018
1
October, 2019
1
September, 2018
Available data
155
fastq
104
bigWig
100
bam
100
tsv
73
zippedFastqFolder
6
hic
4
bed bed3+
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
253
Homo sapiens
Biosample type
253
primary cell
224
tissue
6
in vitro differentiated cells
4
cell line
Organ
77
epithelium
77
pancreas
8
blood
8
bodily fluid
6
brain
5
connective tissue
4
blood vessel
4
vasculature
2
vein
1
liver
Project
136
HPAP
108
AMP
8
T1D
1
ITG
Genome assembly (visualization)
109
hg19
101
GRCh38
Lab
136
Klaus Kaestner, Upenn
108
AMP-T2D consortium
8
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
7
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
253 results
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single cell RNA-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic acinar cell
12
1
pancreatic alpha cell
12
1
pancreatic beta cell
12
1
pancreatic delta cell
11
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