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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ATAC-seq
167
total RNA-seq
107
single cell RNA-seq
43
ChIP-seq
8
snATAC-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
1
whole genome sequencing assay
Assay category
107
Transcription
3
3D chromatin structure
Date released
109
August, 2021
49
April, 2018
48
July, 2018
47
September, 2023
40
September, 2020
34
May, 2022
18
February, 2021
11
July, 2019
10
March, 2020
9
April, 2020
5
October, 2019
3
August, 2018
3
December, 2019
3
June, 2018
3
May, 2023
3
October, 2022
2
November, 2019
1
December, 2018
1
February, 2023
1
March, 2019
1
March, 2023
1
November, 2018
1
September, 2018
Available data
98
tsv
8
txt
2
bedpe bed3+
2
hic
Organism
110
Homo sapiens
Biosample type
109
tissue
1
cell line
Organ
93
heart
9
kidney
6
blood vessel
6
vasculature
2
artery
1
liver
1
pancreas
Project
110
AMP
Genome assembly (visualization)
2
hg19
Lab
99
AMP-T2D consortium
9
Katalin Susztak, Upenn
2
Bing Ren, UCSD
BIOSAMPLE
ASSAY
110 results
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single cell RNA-seq
Hi-C
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
kidney
8
1
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cell line
HepG2
1
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