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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1592
ChIP-seq
1280
total RNA-seq
329
ATAC-seq
182
single cell RNA-seq
181
DNase-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA accessibility
24
3D chromatin structure
Date released
10
April, 2020
9
August, 2021
9
March, 2020
8
January, 2021
4
July, 2019
4
October, 2019
2
February, 2023
2
November, 2019
1
August, 2022
1
December, 2018
1
March, 2019
1
May, 2022
Available data
17
hic
16
bedpe bed3+
2
bed bed3+
1
bedpe
1
bigWig
1
fastq
1
hdf5
1
txt
Organism
51
Homo sapiens
Biosample type
primary cell
44
tissue
4
cell line
4
in vitro differentiated cells
Organ
17
pancreas
10
lung
7
kidney
7
musculature of body
4
limb
3
heart
3
liver
1
blood vessel
1
epithelium
1
vasculature
Project
32
AMP
10
LungMap
10
T1D
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
22
AMP-T2D consortium
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
7
Katalin Susztak, Upenn
3
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
2
audit script error
Audit category:
1
inconsistent assembly
biosample_type!
primary cell
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
52 results
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snATAC-seq
Hi-C
tissue
islet of Langerhans
7
3
lung
10
kidney
6
1
pancreas
4
1
gastrocnemius medialis
4
+ See 7 more…
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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