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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
122
ATAC-seq
89
single cell RNA-seq
60
total RNA-seq
56
snATAC-seq
32
pCHi-C
10
RRBS
9
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
56
DNA accessibility
9
3D chromatin structure
Date released
27
February, 2021
21
May, 2022
8
January, 2021
3
March, 2020
3
October, 2019
1
August, 2021
1
December, 2018
1
March, 2023
Available data
28
fastq
21
zippedFastqFolder
8
hic
6
bedpe bed3+
4
bed bed3+
bigWig
4
hdf5
Organism
65
Homo sapiens
Biosample type
59
primary cell
tissue
4
in vitro differentiated cells
2
cell line
Organ
8
blood
8
bodily fluid
6
epithelium
pancreas
2
blood vessel
2
liver
2
vasculature
2
vein
Project
48
HPAP
8
AMP
8
T1D
1
ITG
Genome assembly (visualization)
7
hg19
1
GRCh38
Lab
48
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
7
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
Audit category:
28
audit script error
4
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bigWig
organ_slims!
pancreas
BIOSAMPLE
ASSAY
65 results
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snATAC-seq
Hi-C
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
2
chondrocytes
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
2
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