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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1527
total RNA-seq
1357
ChIP-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
21
RRBS
18
small RNA-seq
11
Hi-C
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
11
3D chromatin structure
Date released
8
July, 2019
3
February, 2021
1
August, 2021
1
December, 2018
1
October, 2019
Available data
hic
20
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
3
tsv
1
bedpe
1
fastq
Organism
14
Homo sapiens
Biosample type
8
tissue
4
primary cell
2
cell line
Organ
4
limb
4
musculature of body
3
brain
3
kidney
2
blood vessel
2
epithelium
2
liver
2
pancreas
2
vasculature
1
connective tissue
Project
14
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent assembly
assay_title!
HiChIP
files.file_type!
hic
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
14 results
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Clear Filters
Hi-C
snDrop-seq
tissue
gastrocnemius medialis
4
islet of Langerhans
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
Panc1
1
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