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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
99
total RNA-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
99
Transcription
1
3D chromatin structure
Date released
81
February, 2023
16
September, 2020
2
March, 2020
1
March, 2023
Available data
92
fastq
1
hic
Organism
100
Homo sapiens
Biosample type
93
primary cell
7
tissue
Organ
60
pancreas
53
epithelium
Project
AMP
92
HPAP
7
T1D
1
ITG
Genome assembly (visualization)
hg19
99
GRCh38
Lab
92
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
2
AMP-T2D consortium
1
ITG
assembly!
hg19
award.project!
AMP
BIOSAMPLE
ASSAY
100 results
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total RNA-seq
Hi-C
primary cell
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
chondrocytes
1
tissue
islet of Langerhans
7
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