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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
total RNA-seq
141
single cell RNA-seq
84
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
193
Transcription
4
3D chromatin structure
Date released
81
February, 2023
51
May, 2021
45
May, 2020
16
September, 2020
3
October, 2022
1
March, 2023
Available data
96
bam
96
bigWig
96
tsv
92
fastq
4
hic
3
bedpe bed3+
3
cool
Organism
197
Homo sapiens
Biosample type
192
primary cell
5
tissue
Organ
61
pancreas
56
epithelium
Project
101
T1D
AMP
95
HPAP
1
ITG
Genome assembly (visualization)
99
hg19
97
GRCh38
Lab
101
Kyle Gaulton, UCSD
95
Klaus Kaestner, Upenn
AMP-T2D consortium
1
ITG
Audit category:
4
inconsistent ontology term
3
audit script error
award.project!
AMP
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
197 results
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total RNA-seq
Hi-C
primary cell
monocyte
53
pancreatic alpha cell
42
1
exocrine cell
39
pancreatic beta cell
11
1
B cell
2
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tissue
islet of Langerhans
5
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