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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
188
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
286
Transcription
8
3D chromatin structure
Date released
81
February, 2023
62
August, 2021
59
May, 2021
45
May, 2020
26
May, 2022
16
September, 2020
3
October, 2022
1
March, 2019
1
March, 2023
Available data
106
tsv
102
bam
98
bigWig
98
fastq
55
txt
7
hic
5
bedpe bed3+
3
cool
2
bed bed3+
1
bedpe
Organism
294
Homo sapiens
Biosample type
194
primary cell
85
tissue
10
cell line
5
in vitro differentiated cells
Organ
71
pancreas
56
epithelium
50
kidney
30
liver
Project
101
T1D
97
AMP
95
HPAP
1
ITG
Genome assembly (visualization)
104
hg19
97
GRCh38
Lab
AMP-T2D consortium
115
Kyle Gaulton, UCSD
95
Klaus Kaestner, Upenn
50
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
1
ITG
Audit category:
4
inconsistent ontology term
3
audit script error
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
294 results
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total RNA-seq
Hi-C
primary cell
monocyte
53
pancreatic alpha cell
42
1
exocrine cell
39
pancreatic beta cell
11
1
CD8-positive, alpha-beta T cell
4
+ See 25 more…
tissue
kidney
49
1
liver
20
islet of Langerhans
12
2
pancreas
1
cell line
HepG2
9
1
in vitro differentiated cells
embryonic stem cell
5
See all biosamples
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