Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
479
ChIP-seq
297
ATAC-seq
263
single cell RNA-seq
250
total RNA-seq
87
RNA microarray
84
snATAC-seq
58
WGBS
57
pCHi-C
21
RRBS
10
Hi-C
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
10
3D chromatin structure
Date released
8
July, 2019
1
August, 2021
1
December, 2018
Available data
hic
20
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
1
fastq
Organism
10
Homo sapiens
Biosample type
5
tissue
4
primary cell
1
cell line
Organ
4
limb
4
musculature of body
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
pancreas
Project
10
AMP
Genome assembly (visualization)
5
hg19
GRCh38
Lab
9
AMP-T2D consortium
1
Bing Ren, UCSD
assembly!
GRCh38
files.file_type!
hic
month_released!
November, 2017
BIOSAMPLE
ASSAY
10 results
search-icon
table-tab-icon
Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
Download