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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 566ChIP-seq
  • 270ATAC-seq
  • 263single cell RNA-seq
  • 248total RNA-seq
  • 87RNA microarray
  • 83snATAC-seq
  • 75WGBS
  • 53pCHi-C
  • 26DNase-seq
  • 10MeRIP-seq
  • 7Hi-C
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 73D chromatin structure
Date released
  • 4July, 2019
  • 1August, 2021
  • 1December, 2018
  • 1March, 2023
Available data
  • 1bedpe bed3+
  • 1fastq
  • 1hic
Organism
  • 7Homo sapiens
Biosample type
  • 5tissue
  • 1cell line
  • 1primary cell
Organ
  • 4limb
  • 4musculature of body
  • 1liver
  • 1pancreas
Project
  • 6AMP
  • 1ITG
Genome assembly (visualization)
  • hg19
  • 2GRCh38
Lab
  • 5AMP-T2D consortium
  • 1Bing Ren, UCSD
  • 1ITG
assembly!
  • hg19
BIOSAMPLE
ASSAY

7 results

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Hi-C
tissue
gastrocnemius medialis4
islet of Langerhans1
cell line
HepG21
primary cell
chondrocytes1
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