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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1353
ChIP-seq
1301
total RNA-seq
460
ATAC-seq
355
single cell RNA-seq
206
DNase-seq
74
WGBS
55
snATAC-seq
44
pCHi-C
21
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
RNA microarray
Assay category
21
3D chromatin structure
Date released
8
July, 2019
8
March, 2020
2
August, 2021
1
March, 2019
1
March, 2023
November, 2019
1
October, 2019
Available data
12
hic
10
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
1
bedpe
Organism
21
Homo sapiens
Biosample type
15
tissue
6
primary cell
cell line
Organ
6
musculature of body
4
blood vessel
4
limb
4
vasculature
3
brain
3
epithelium
3
heart
3
pancreas
2
liver
1
connective tissue
1
kidney
1
vein
Project
20
AMP
1
ITG
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
17
AMP-T2D consortium
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
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inconsistent ontology term
audit.ERROR.category!
audit script error
inconsistent ontology term
biosample_type!
cell line
month_released!
November, 2019
BIOSAMPLE
ASSAY
21 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
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