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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1265
total RNA-seq
1014
ChIP-seq
470
ATAC-seq
228
single cell RNA-seq
200
DNase-seq
85
RNA microarray
58
WGBS
55
snATAC-seq
54
pCHi-C
18
small RNA-seq
17
RRBS
12
Hi-C
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
12
3D chromatin structure
Date released
8
July, 2019
1
August, 2021
1
March, 2019
1
March, 2023
1
October, 2019
Available data
19
hic
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
1
bedpe
fastq
Organism
12
Homo sapiens
Biosample type
6
tissue
5
primary cell
1
cell line
Organ
4
limb
4
musculature of body
3
brain
2
blood vessel
2
epithelium
2
pancreas
2
vasculature
1
connective tissue
1
kidney
1
liver
Project
11
AMP
1
ITG
Genome assembly (visualization)
7
hg19
2
GRCh38
Lab
9
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
audit script error
files.file_type!
bedpe bed3+
fastq
month_released!
February, 2020
BIOSAMPLE
ASSAY
12 results
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Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
1
kidney
1
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
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