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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1713
ChIP-seq
1336
total RNA-seq
443
ATAC-seq
354
single cell RNA-seq
199
DNase-seq
84
snATAC-seq
57
WGBS
46
pCHi-C
24
Hi-C
18
small RNA-seq
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
24
3D chromatin structure
Date released
6
July, 2019
6
March, 2020
3
August, 2021
3
October, 2022
2
October, 2019
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
15
hic
13
bedpe bed3+
3
bed bed3+
3
bigWig
3
cool
3
hdf5
1
bedpe
1
fastq
Organism
24
Homo sapiens
Biosample type
15
tissue
6
primary cell
3
cell line
Organ
8
pancreas
7
epithelium
6
musculature of body
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
20
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
17
hg19
2
GRCh38
Lab
16
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
files.file_type!
bed bedMethyl
organ_slims!
blood vessel
large intestine
BIOSAMPLE
ASSAY
24 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
heart
1
heart left ventricle
1
+ See 4 more…
primary cell
astrocyte of the cerebellum
1
brain pericyte
1
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
cell line
HepG2
2
Panc1
1
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