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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
DNase-seq
53
ChIP-seq
23
Hi-C
2
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
23
3D chromatin structure
Date released
8
March, 2020
4
July, 2019
3
October, 2019
3
October, 2022
2
August, 2021
1
March, 2019
1
March, 2023
1
November, 2019
Available data
18
hic
15
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
Organism
23
Homo sapiens
Biosample type
11
tissue
10
primary cell
2
cell line
Organ
7
epithelium
7
pancreas
5
blood vessel
5
vasculature
3
brain
3
heart
3
liver
2
musculature of body
2
vein
1
connective tissue
1
kidney
Project
19
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
22
hg19
2
GRCh38
Lab
16
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
23 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 4 more…
cell line
HepG2
1
Panc1
1
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