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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
209
ChIP-seq
151
ATAC-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
7
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
7
3D chromatin structure
Date released
3
October, 2022
2
November, 2019
1
March, 2020
1
October, 2019
Available data
6
bedpe bed3+
6
hic
3
cool
1
bed bed3+
1
bigWig
1
hdf5
Organism
7
Homo sapiens
Biosample type
3
primary cell
2
cell line
2
tissue
Organ
8
epithelium
7
pancreas
6
musculature of body
5
blood vessel
5
vasculature
4
limb
3
brain
3
heart
3
liver
2
vein
1
connective tissue
1
kidney
Project
4
AMP
3
HPAP
Genome assembly (visualization)
7
hg19
1
GRCh38
Lab
4
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
award.project!
LungMap
lab.title!
Bing Ren, UCSD
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
7 results
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Hi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
Panc1
1
tissue
islet of Langerhans
1
pancreas
1
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