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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 256total RNA-seq
  • 152single cell RNA-seq
  • 142ATAC-seq
  • 106ChIP-seq
  • 82snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 83D chromatin structure
Date released
  • 3August, 2021
  • 3October, 2022
  • 1March, 2019
  • 1March, 2023
Available data
  • 7hic
  • 5bedpe bed3+
  • 3cool
  • 1bedpe
Organism
  • 8Homo sapiens
Biosample type
  • 4primary cell
  • 3tissue
  • 1cell line
Organ
  • 5pancreas
  • 3epithelium
  • 1kidney
  • 1liver
Project
  • 4AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 6hg19
  • 1GRCh38
Lab
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 3audit script error
award.rfa!
  • AMP
BIOSAMPLE
ASSAY

8 results

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Hi-C
primary cell
chondrocytes1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
tissue
islet of Langerhans2
kidney1
cell line
HepG21
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