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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1387
ChIP-seq
488
ATAC-seq
212
total RNA-seq
210
DNase-seq
158
single cell RNA-seq
85
RNA microarray
84
snATAC-seq
68
WGBS
22
pCHi-C
21
RRBS
12
Hi-C
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
2
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Assay category
12
3D chromatin structure
Date released
8
July, 2019
1
August, 2021
1
March, 2019
1
March, 2023
1
October, 2019
Available data
21
hic
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
Organism
12
Homo sapiens
Biosample type
6
primary cell
6
tissue
cell line
Organ
4
limb
4
musculature of body
3
blood vessel
3
brain
3
epithelium
3
vasculature
1
connective tissue
1
kidney
1
liver
1
pancreas
1
vein
Project
11
AMP
1
ITG
Genome assembly (visualization)
7
hg19
1
GRCh38
Lab
9
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
biosample_type!
cell line
files.file_type!
bedpe bed3+
tsv
organ_slims!
skin of body
BIOSAMPLE
ASSAY
12 results
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Hi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
tissue
gastrocnemius medialis
4
islet of Langerhans
1
kidney
1
See all biosamples
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