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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1283
ChIP-seq
779
total RNA-seq
242
ATAC-seq
203
DNase-seq
135
single cell RNA-seq
87
RNA microarray
34
pCHi-C
24
WGBS
19
RRBS
18
Hi-C
16
small RNA-seq
3
FAIRE-seq
3
snDrop-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
snATAC-seq
Assay category
18
3D chromatin structure
Date released
8
July, 2019
7
March, 2020
2
October, 2019
1
December, 2018
Available data
9
hic
8
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
1
fastq
Organism
18
Homo sapiens
Biosample type
11
tissue
6
primary cell
in vitro differentiated cells
1
cell line
Organ
6
musculature of body
5
blood vessel
5
epithelium
5
vasculature
4
limb
pancreas
3
brain
3
heart
3
liver
2
vein
1
connective tissue
Project
18
AMP
Genome assembly (visualization)
13
hg19
Lab
18
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
biosample_type!
in vitro differentiated cells
organ_slims!
pancreas
BIOSAMPLE
ASSAY
18 results
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Hi-C
tissue
gastrocnemius medialis
4
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 2 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
HepG2
1
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