Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1212
total RNA-seq
1171
ChIP-seq
280
ATAC-seq
154
DNase-seq
89
single cell RNA-seq
87
RNA microarray
37
pCHi-C
28
snATAC-seq
20
Hi-C
20
WGBS
15
small RNA-seq
10
MeRIP-seq
10
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
20
3D chromatin structure
Date released
7
March, 2020
4
July, 2019
3
August, 2021
3
October, 2019
2
November, 2019
1
December, 2018
March, 2019
Available data
13
bedpe bed3+
13
hic
1
bed bed3+
1
bigWig
1
fastq
1
hdf5
Organism
20
Homo sapiens
Biosample type
12
tissue
primary cell
4
cell line
4
in vitro differentiated cells
Organ
6
musculature of body
5
pancreas
4
limb
heart
3
liver
1
blood vessel
1
epithelium
1
kidney
1
vasculature
Project
20
AMP
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
17
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
primary cell
files.file_type!
tagAlign
month_released!
March, 2019
organ_slims!
heart
BIOSAMPLE
ASSAY
20 results
search-icon
table-tab-icon
Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
2
psoas muscle
2
aorta
1
kidney
1
+ See 2 more…
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
Download