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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 279ChIP-seq
  • 247total RNA-seq
  • 200ATAC-seq
  • 187single cell RNA-seq
  • 56snATAC-seq
  • 47WGBS
  • 31DNase-seq
  • 17pCHi-C
  • 10Hi-C
  • 10RRBS
  • 2small RNA-seq
  • 1DNAme array
  • 1FAIRE-seq
Assay category
  • 103D chromatin structure
Date released
  • 4July, 2019
  • 3October, 2022
  • 1March, 2020
  • 1March, 2023
  • 1October, 2019
Available data
  • 6hic
  • 4bed bed3+
  • 4bedpe bed3+
  • 4bigWig
  • 4hdf5
  • 3cool
Organism
  • 10Homo sapiens
Biosample type
  • 16tissue
  • 10primary cell
  • 4cell line
  • 4in vitro differentiated cells
Organ
  • 7epithelium
  • 4blood vessel
  • 4vasculature
  • 3brain
  • 3pancreas
  • 2vein
  • 1connective tissue
  • 1liver
Project
  • 6AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 9hg19
  • 1GRCh38
Lab
  • 6AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 4audit script error
BIOSAMPLE
ASSAY

10 results

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Hi-C
primary cell
endothelial cell of umbilical vein2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
chondrocytes1
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