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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
55
total RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
1
pCHi-C
Assay category
8
3D chromatin structure
Date released
3
October, 2022
2
July, 2019
1
March, 2020
1
November, 2019
1
October, 2019
Available data
6
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bigWig
2
hdf5
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
cell line
Organ
9
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
0
stomach
Project
5
AMP
3
HPAP
Genome assembly (visualization)
8
hg19
Lab
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
files.file_type!
bam
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
8 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
cell line
EndoC_BH1
1
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