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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
355
total RNA-seq
141
ATAC-seq
130
ChIP-seq
80
single cell RNA-seq
51
WGBS
10
MeRIP-seq
9
snATAC-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
DNase-seq
1
pCHi-C
Assay category
8
3D chromatin structure
Date released
3
October, 2022
2
November, 2019
1
August, 2021
1
March, 2019
1
March, 2020
Available data
7
bedpe bed3+
7
hic
3
cool
bed bed3+
1
bedpe
1
bigWig
1
hdf5
Organism
8
Homo sapiens
Biosample type
4
tissue
3
primary cell
1
cell line
Organ
8
pancreas
6
epithelium
6
musculature of body
4
limb
3
blood vessel
3
heart
3
liver
3
vasculature
2
vein
1
kidney
Project
5
AMP
3
HPAP
Genome assembly (visualization)
7
hg19
Lab
3
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
files.file_type!
bed bed3+
month_released!
February, 2023
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
8 results
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Hi-C
tissue
islet of Langerhans
3
pancreas
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
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