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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 33Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 333D chromatin structure
Date released
  • 10March, 2020
  • 8July, 2019
  • 5October, 2019
  • 3August, 2021
  • 3October, 2022
  • 2November, 2019
  • 1December, 2018
  • 1March, 2023
Available data
  • 23hic
  • 20bedpe bed3+
  • 5bed bed3+
  • 5bigWig
  • 5hdf5
  • 3cool
  • bedpe
  • 1fastq
Organism
  • 33Homo sapiens
Biosample type
  • 15tissue
  • 10primary cell
  • 4cell line
  • 4in vitro differentiated cells
Organ
  • 8epithelium
  • 8pancreas
  • 6musculature of body
  • 5blood vessel
  • 5vasculature
  • 4limb
  • 4liver
  • 3brain
  • 3heart
  • 2vein
  • 1connective tissue
  • 1kidney
Project
  • 29AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 26hg19
  • 2GRCh38
Lab
  • 26AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 5inconsistent ontology term
  • 4audit script error
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bedpe
BIOSAMPLE
ASSAY

33 results

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Clear Filters
Hi-C
tissue
gastrocnemius medialis4
islet of Langerhans2
psoas muscle2
aorta1
heart1
primary cell
endothelial cell of umbilical vein2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
brain pericyte1
chondrocytes1
cell line
HepG22
EndoC_BH11
Panc11
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
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