Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1871ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 29Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 293D chromatin structure
Date released
  • 10March, 2020
  • 4July, 2019
  • 4October, 2019
  • 3August, 2021
  • 3October, 2022
  • 2November, 2019
  • 1December, 2018
  • 1March, 2019
  • 1March, 2023
Available data
  • 23hic
  • 20bedpe bed3+
  • 5bed bed3+
  • 5bigWig
  • hdf5
  • 3cool
  • 1bedpe
  • 1fastq
Organism
  • 29Homo sapiens
Biosample type
  • 16tissue
  • 6primary cell
  • 4in vitro differentiated cells
  • 3cell line
Organ
  • 8pancreas
  • 6epithelium
  • 6musculature of body
  • 4limb
  • 3blood vessel
  • 3heart
  • 3liver
  • 3vasculature
  • 2vein
  • 1kidney
Project
  • 25AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 22hg19
  • 1GRCh38
Lab
  • 21AMP-T2D consortium
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 5inconsistent ontology term
  • 4audit script error
files.file_type!
  • hdf5
BIOSAMPLE
ASSAY

29 results

search-icontable-tab-icon
Clear Filters
Hi-C
tissue
gastrocnemius medialis4
islet of Langerhans3
psoas muscle2
aorta1
heart1
primary cell
endothelial cell of umbilical vein2
chondrocytes1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
HepG22
EndoC_BH11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego