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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
53
ChIP-seq
26
Hi-C
4
ATAC-seq
2
Capture-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
26
3D chromatin structure
Date released
10
March, 2020
5
October, 2019
4
July, 2019
3
October, 2022
2
November, 2019
1
August, 2021
1
March, 2023
Available data
21
hic
18
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
fastq
Organism
26
Homo sapiens
Biosample type
10
primary cell
10
tissue
4
in vitro differentiated cells
2
cell line
Organ
8
epithelium
7
pancreas
5
blood vessel
5
vasculature
3
brain
3
heart
2
liver
2
musculature of body
2
vein
1
connective tissue
1
kidney
Project
22
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
25
hg19
2
GRCh38
Lab
21
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
26 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 4 more…
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
Panc1
1
See all biosamples
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