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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
total RNA-seq
235
ChIP-seq
80
single cell RNA-seq
69
ATAC-seq
10
DNase-seq
6
Hi-C
4
WGBS
3
FAIRE-seq
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Assay category
6
3D chromatin structure
Date released
2
March, 2020
2
November, 2019
2
October, 2019
Available data
5
hic
4
bedpe bed3+
1
bed bed3+
1
bigWig
1
hdf5
Organism
6
Homo sapiens
Biosample type
2
cell line
2
primary cell
2
tissue
Organ
6
musculature of body
5
blood vessel
5
epithelium
5
vasculature
4
limb
4
pancreas
3
brain
3
heart
3
liver
2
vein
1
connective tissue
Project
6
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
6 results
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Hi-C
cell line
EndoC_BH1
1
Panc1
1
primary cell
endothelial cell of umbilical vein
2
tissue
islet of Langerhans
1
pancreas
1
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