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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1524
ChIP-seq
1366
total RNA-seq
392
ATAC-seq
299
single cell RNA-seq
185
DNase-seq
86
RNA microarray
83
snATAC-seq
53
pCHi-C
28
WGBS
22
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
22
3D chromatin structure
Date released
9
March, 2020
6
July, 2019
October, 2019
3
August, 2021
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
14
hic
12
bedpe bed3+
2
bed bed3+
2
bigWig
2
hdf5
1
bedpe
1
fastq
Organism
22
Homo sapiens
Biosample type
15
tissue
3
primary cell
2
cell line
2
in vitro differentiated cells
Organ
8
pancreas
epithelium
6
musculature of body
4
blood vessel
4
limb
4
liver
4
vasculature
3
brain
2
heart
1
connective tissue
1
kidney
1
vein
Project
21
AMP
1
ITG
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
17
AMP-T2D consortium
3
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
2
inconsistent ontology term
month_released!
August, 2022
October, 2019
organ_slims!
epithelium
eye
BIOSAMPLE
ASSAY
22 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart left ventricle
1
+ See 4 more…
primary cell
astrocyte of the cerebellum
1
brain pericyte
1
chondrocytes
1
cell line
HepG2
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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