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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
335
total RNA-seq
136
ChIP-seq
121
ATAC-seq
80
single cell RNA-seq
51
WGBS
10
MeRIP-seq
9
snATAC-seq
8
DNase-seq
7
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
7
3D chromatin structure
Date released
3
October, 2022
November, 2019
1
August, 2021
1
March, 2019
1
March, 2020
1
October, 2019
Available data
5
bedpe bed3+
5
hic
3
cool
1
bed bed3+
1
bedpe
1
bigWig
1
hdf5
Organism
7
Homo sapiens
Biosample type
3
primary cell
3
tissue
1
cell line
Organ
7
epithelium
7
pancreas
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
4
AMP
3
HPAP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
3
audit script error
Audit category:
1
inconsistent assembly
month_released!
February, 2023
November, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
7 results
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Hi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
pancreas
1
cell line
Panc1
1
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