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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
112
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
17
DNase-seq
6
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
6
3D chromatin structure
Date released
3
October, 2022
2
July, 2019
1
November, 2019
Available data
4
bedpe bed3+
4
hic
3
cool
2
bed bed3+
2
bigWig
2
hdf5
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
cell line
Organ
9
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
vein
1
connective tissue
1
kidney
Project
3
AMP
3
HPAP
Genome assembly (visualization)
6
hg19
Lab
3
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
organ_slims!
intestine
vein
BIOSAMPLE
ASSAY
6 results
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Hi-C
primary cell
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
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