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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476total RNA-seq
  • 1297ChIP-seq
  • 441ATAC-seq
  • 363single cell RNA-seq
  • 190DNase-seq
  • 87RNA microarray
  • 77snATAC-seq
  • 67WGBS
  • 36pCHi-C
  • 24Hi-C
  • 18small RNA-seq
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 243D chromatin structure
Date released
  • 8March, 2020
  • 4July, 2019
  • 3August, 2021
  • 3October, 2022
  • 2November, 2019
  • 2October, 2019
  • 1March, 2019
  • 1March, 2023
Available data
  • 19hic
  • 16bedpe bed3+
  • 3cool
  • 1bedpe
Organism
  • 24Homo sapiens
Biosample type
  • 16tissue
  • 6primary cell
  • 2cell line
Organ
  • 8pancreas
  • 6epithelium
  • 6musculature of body
  • 4limb
  • 3blood vessel
  • 3heart
  • 3vasculature
  • 2liver
  • 2vein
  • 1kidney
Project
  • 20AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 18hg19
  • 1GRCh38
Lab
  • 16AMP-T2D consortium
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 4audit script error
  • 1inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

24 results

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Clear Filters
Hi-C
tissue
gastrocnemius medialis4
islet of Langerhans3
psoas muscle2
aorta1
heart1
primary cell
endothelial cell of umbilical vein2
chondrocytes1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
cell line
EndoC_BH11
HepG21
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