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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1476
total RNA-seq
1297
ChIP-seq
441
ATAC-seq
363
single cell RNA-seq
190
DNase-seq
87
RNA microarray
77
snATAC-seq
67
WGBS
36
pCHi-C
24
Hi-C
18
small RNA-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
24
3D chromatin structure
Date released
8
March, 2020
4
July, 2019
3
August, 2021
3
October, 2022
2
November, 2019
2
October, 2019
1
March, 2019
1
March, 2023
Available data
19
hic
16
bedpe bed3+
3
cool
1
bedpe
Organism
24
Homo sapiens
Biosample type
16
tissue
6
primary cell
2
cell line
Organ
8
pancreas
6
epithelium
6
musculature of body
4
limb
3
blood vessel
3
heart
3
vasculature
2
liver
2
vein
1
kidney
Project
20
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
18
hg19
1
GRCh38
Lab
16
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
replication_type!
isogenic
BIOSAMPLE
ASSAY
24 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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