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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476total RNA-seq
  • 1297ChIP-seq
  • 441ATAC-seq
  • 363single cell RNA-seq
  • 190DNase-seq
  • 87RNA microarray
  • 78snATAC-seq
  • 67WGBS
  • 36pCHi-C
  • 24Hi-C
  • 18small RNA-seq
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 243D chromatin structure
Date released
  • 8March, 2020
  • 4July, 2019
  • 3August, 2021
  • 3October, 2022
  • 2November, 2019
  • 2October, 2019
  • 1March, 2019
  • 1March, 2023
Available data
  • 19hic
  • 16bedpe bed3+
  • 3cool
  • 1bedpe
Organism
  • 24Homo sapiens
Biosample type
  • 16tissue
  • 6primary cell
  • 2cell line
Organ
  • 8pancreas
  • 6epithelium
  • 6musculature of body
  • 4limb
  • 3blood vessel
  • 3heart
  • 3vasculature
  • 2liver
  • 2vein
  • 1kidney
Project
  • 20AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 18hg19
  • 1GRCh38
Lab
  • 16AMP-T2D consortium
  • 3Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1ITG
  • 1Katalin Susztak, Upenn
Audit category:
  • 4audit script error
  • 1inconsistent ontology term
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

24 results

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Clear Filters
Hi-C
tissue
gastrocnemius medialis4
islet of Langerhans3
psoas muscle2
aorta1
heart1
heart left ventricle1
heart right ventricle1
kidney1
liver1
pancreas1
primary cell
endothelial cell of umbilical vein2
chondrocytes1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
cell line
EndoC_BH11
HepG21
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