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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1286total RNA-seq
  • 1116ChIP-seq
  • 336ATAC-seq
  • 274single cell RNA-seq
  • 163DNase-seq
  • 87RNA microarray
  • 72snATAC-seq
  • 67WGBS
  • 15Hi-C
  • 8pCHi-C
  • 7small RNA-seq
  • 5GRO-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1FAIRE-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 153D chromatin structure
Date released
  • 6March, 2020
  • 4July, 2019
  • 2August, 2021
  • 2November, 2019
  • 1October, 2019
Available data
  • 11hic
  • 9bedpe bed3+
Organism
  • 15Homo sapiens
Biosample type
  • 12tissue
  • 2cell line
  • 1primary cell
Organ
  • 6musculature of body
  • 4limb
  • 2blood vessel
  • 2epithelium
  • 2heart
  • 2liver
  • 2pancreas
  • 2vasculature
  • 1kidney
  • 1vein
Project
  • 15AMP
Genome assembly (visualization)
  • 11hg19
Lab
  • 13AMP-T2D consortium
  • 1Bing Ren, UCSD
  • 1Katalin Susztak, Upenn
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

15 results

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Clear Filters
Hi-C
tissue
gastrocnemius medialis4
psoas muscle2
aorta1
heart left ventricle1
heart right ventricle1
cell line
EndoC_BH11
HepG21
primary cell
endothelial cell of umbilical vein1
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