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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1769
ChIP-seq
1466
total RNA-seq
485
ATAC-seq
363
single cell RNA-seq
201
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
56
pCHi-C
29
Hi-C
20
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
41
May, 2022
10
July, 2019
10
November, 2020
9
August, 2017
7
November, 2018
6
February, 2021
2
February, 2023
Available data
41
zippedFastqFolder
17
fastq
16
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
6
tsv
Organism
85
Homo sapiens
Biosample type
47
primary cell
29
tissue
9
cell line
Organ
61
pancreas
53
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
blood vessel
2
spleen
vasculature
1
limb
1
musculature of body
Project
47
HPAP
36
AMP
2
T1D
Genome assembly (visualization)
16
GRCh38
Lab
47
Klaus Kaestner, Upenn
26
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
organ_slims!
blood vessel
vasculature
BIOSAMPLE
ASSAY
85 results
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WGBS
MeRIP-seq
HiChIP
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
islet of Langerhans
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 8 more…
cell line
EndoC_BH1
6
2
HepG2
1
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