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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1592
ChIP-seq
1280
total RNA-seq
331
ATAC-seq
182
single cell RNA-seq
DNase-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
28
DNA methylation
Date released
84
February, 2021
12
July, 2019
9
August, 2017
7
November, 2018
2
December, 2019
2
February, 2023
1
August, 2021
Available data
84
txt
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
11
fastq
2
tsv
Organism
116
Homo sapiens
Biosample type
114
tissue
primary cell
3
cell line
Organ
84
bone element
8
heart
7
adipose tissue
7
connective tissue
5
liver
4
pancreas
2
blood vessel
2
kidney
2
spleen
2
vasculature
1
epithelium
1
limb
1
musculature of body
Project
115
AMP
2
T1D
Genome assembly (visualization)
17
GRCh38
Lab
115
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
2
audit script error
assay_title!
DNase-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
117 results
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RNA microarray
WGBS
HiChIP
tissue
bone element
84
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
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cell line
EndoC_BH1
2
HepG2
1
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