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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1798
ChIP-seq
1129
total RNA-seq
525
ATAC-seq
369
single cell RNA-seq
210
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
54
pCHi-C
34
Hi-C
21
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
84
February, 2021
2
December, 2019
2
February, 2023
Available data
84
txt
2
tsv
Organism
88
Homo sapiens
Biosample type
86
tissue
2
cell line
Organ
84
bone element
2
kidney
adipose tissue
1
connective tissue
1
epithelium
Project
86
AMP
2
T1D
Lab
86
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
2
audit script error
organ_slims!
adipose tissue
adrenal gland
BIOSAMPLE
ASSAY
88 results
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RNA microarray
HiChIP
tissue
bone element
84
kidney interstitium
1
renal glomerulus
1
cell line
EndoC_BH1
2
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