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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
ATAC-seq
250
ChIP-seq
150
total RNA-seq
134
single cell RNA-seq
87
RNA microarray
57
snATAC-seq
52
pCHi-C
47
WGBS
30
Hi-C
15
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
15
DNA methylation
Date released
13
July, 2019
2
August, 2017
2
February, 2023
Available data
17
bed bedMethyl
17
bigBed bedMethyl
fastq
Organism
17
Homo sapiens
Biosample type
8
primary cell
7
tissue
2
cell line
Organ
6
epithelium
4
kidney
3
musculature of body
2
brain
heart
2
pancreas
1
connective tissue
1
eye
1
liver
1
pericardium
1
vasculature
Project
15
AMP
2
T1D
Genome assembly (visualization)
13
hg19
Lab
15
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bam
fastq
organ_slims!
heart
BIOSAMPLE
ASSAY
17 results
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RRBS
HiChIP
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
+ See 3 more…
tissue
skeletal muscle tissue
2
brain
1
islet of Langerhans
1
kidney
1
pancreas
1
+ See 1 more…
cell line
EndoC_BH1
2
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