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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
212
ChIP-seq
188
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
152
Transcription
Date released
47
September, 2023
40
September, 2020
33
May, 2022
13
August, 2021
12
February, 2021
9
April, 2020
3
May, 2023
2
February, 2023
Available data
52
zippedFastqFolder
34
fastq
8
txt
Organism
159
Homo sapiens
Biosample type
85
primary cell
67
tissue
7
cell line
Organ
60
kidney
9
lung
2
liver
Project
85
HPAP
47
KPMP
16
AMP
9
LungMap
2
T1D
Lab
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
5
Bing Ren, UCSD
2
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
small RNA-seq
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
159 results
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single cell RNA-seq
STARR-seq
HiChIP
primary cell
Langerhans cell
85
tissue
kidney
58
lung
9
cell line
EndoC_BH1
2
HEK293T
2
HepG2
2
Synthesized DNA
1
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