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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1280
total RNA-seq
848
ChIP-seq
326
ATAC-seq
182
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
28
snATAC-seq
24
Hi-C
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
182
Transcription
Date released
106
August, 2021
47
September, 2023
9
April, 2020
6
April, 2018
6
February, 2021
3
December, 2019
3
February, 2023
3
May, 2023
1
May, 2022
Available data
111
tsv
13
txt
6
bam
6
bigWig
6
csv
6
fastq
Organism
184
Homo sapiens
Biosample type
primary cell
180
tissue
2
cell line
2
in vitro differentiated cells
Organ
93
heart
64
kidney
9
lung
6
blood vessel
6
pancreas
6
vasculature
2
artery
1
liver
1
musculature of body
Project
126
AMP
47
KPMP
9
LungMap
2
T1D
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
115
AMP-T2D consortium
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
2
Kyle Gaulton, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
assay_title!
small RNA-seq
biosample_type!
primary cell
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
184 results
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single cell RNA-seq
HiChIP
tissue
kidney
64
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 14 more…
cell line
EndoC_BH1
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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