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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1071
total RNA-seq
943
ChIP-seq
374
ATAC-seq
230
single cell RNA-seq
195
DNase-seq
87
RNA microarray
55
pCHi-C
46
snATAC-seq
24
Hi-C
17
WGBS
16
small RNA-seq
15
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
46
DNA accessibility
Date released
22
May, 2022
10
April, 2020
8
January, 2021
6
August, 2021
2
February, 2023
Available data
fastq
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
47
Homo sapiens
Biosample type
29
primary cell
17
tissue
2
cell line
Organ
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
21
HPAP
10
LungMap
10
T1D
7
AMP
Genome assembly (visualization)
1
hg19
Lab
21
Klaus Kaestner, Upenn
10
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
fastq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
48 results
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Clear Filters
snATAC-seq
HiChIP
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
tissue
lung
10
kidney
6
skeletal muscle tissue
1
cell line
EndoC_BH1
2
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